STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1796PFAM: TrkA-N domain protein; TrkA-C domain protein; UspA domain protein; KEGG: pca:Pcar_0177 K+ transport systems, NAD- binding component. (471 aa)    
Predicted Functional Partners:
Dret_1969
Potassium uptake protein, TrkH family; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
 
 
 0.885
Dret_1795
PFAM: sodium/hydrogen exchanger; KEGG: pca:Pcar_0178 Na+/H+ antiporter.
 
   
 0.786
Dret_1794
H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: dma:DMR_01730 putative potassium uptake system membrane components.
  
 
 0.757
Dret_0018
PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; KEGG: dma:DMR_00320 rRNA (cytosine-C(5)-)- methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.470
Dret_1740
KEGG: dvm:DvMF_0872 hypothetical protein.
   
    0.433
Dret_0871
PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein.
  
    0.419
Dret_0415
PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein.
  
    0.403
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.