STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_2315PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A. (660 aa)    
Predicted Functional Partners:
Dret_2314
PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit, putative.
 
 0.996
Dret_2317
KEGG: dma:DMR_01900 heterodisulfide reductase subunit C.
 
 0.991
Dret_0197
CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C.
 0.987
Dret_0416
PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dat:HRM2_22770 HdrD2'.
 
 0.985
Dret_0420
PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: sfu:Sfum_0823 methyl-viologen-reducing hydrogenase, delta subunit.
   0.985
Dret_0195
PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit, putative.
 
 0.984
Dret_0198
KEGG: dma:DMR_01900 heterodisulfide reductase subunit C.
 
 0.981
Dret_0417
KEGG: sfu:Sfum_0820 putative heterodisulfide reductase, C subunit.
 
 0.981
Dret_2260
PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: dal:Dalk_1624 methyl-viologen-reducing hydrogenase delta subunit.
  
 
0.952
Dret_2316
CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C.
 
 0.945
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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