STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0423Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain-containing protein AraC type; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: scl:sce7020 AraC family transcriptional regulator. (311 aa)    
Predicted Functional Partners:
Dtox_0422
TIGRFAM: cell wall/surface repeat protein; PFAM: protein of unknown function DUF291; S-layer domain protein; KEGG: hypothetical protein.
 
     0.735
Dtox_2883
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain-containing protein AraC type; Cupin 2 conserved barrel domain protein; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: mmw:Mmwyl1_1173 cupin 2 domain-containing protein.
 
 
 0.714
Dtox_2680
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain-containing protein AraC type; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: dds:Ddes_0430 transcriptional regulator, AraC family.
 
 
 0.580
Dtox_3846
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain-containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: bha:BH3679 two-component response regulator.
 
 
0.543
Dtox_0424
Hypothetical protein.
       0.497
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.458
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.