STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2575Hypothetical protein. (306 aa)    
Predicted Functional Partners:
Dtox_4194
KEGG: baa:BA_0022 hypothetical protein.
 
      0.495
Dtox_2573
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bsu:BSU27120 RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V).
       0.493
Dtox_2574
KEGG: bsu:BSU27130 hypothetical protein.
       0.493
Dtox_3471
PFAM: peptidase M56 BlaR1; KEGG: bar:GBAA1079 hypothetical protein.
 
      0.438
Dtox_0164
PFAM: peptidase M56 BlaR1; KEGG: swp:swp_3950 TonB.
 
      0.417
Dtox_2615
PFAM: cell wall hydrolase/autolysin; peptidase M56 BlaR1; SMART: cell wall hydrolase/autolysin; KEGG: bar:GBAA1079 hypothetical protein.
 
      0.410
Dtox_2616
PFAM: Penicillinase repressor; KEGG: swd:Swoo_3737 CopY family transcriptional regulator.
  
  
 0.410
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.