STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_2829PFAM: inner-membrane translocator; KEGG: avi:Avi_5970 ABC transporter membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family. (358 aa)    
Predicted Functional Partners:
Dtox_2827
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_1962 ABC transporter-related protein.
 
 
 0.984
Dtox_2826
Hypothetical protein.
 
  
 0.935
Dtox_2828
PFAM: inner-membrane translocator; KEGG: rle:pRL120201 putative permease component of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
    
0.866
Dtox_3958
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_0064 periplasmic binding protein/LacI transcriptional regulator.
  
 
 0.837
Dtox_0439
Cytidyltransferase-related domain protein; KEGG: vha:VIBHAR_05301 citrate lyase ligase; TIGRFAM: cytidyltransferase-related domain protein; PFAM: Citrate lyase ligase domain protein; SMART: Citrate lyase ligase domain protein.
  
     0.563
Dtox_2825
PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: gbm:Gbem_2040 2-hydroxyglutaryl-CoA dehydratase D-component.
       0.411
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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