STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_3911PFAM: AIG2 family protein; KEGG: pub:SAR11_1133 hypothetical protein. (152 aa)    
Predicted Functional Partners:
Dtox_3913
KEGG: sat:SYN_01895 putative cytoplasmic protein.
 
    0.880
Dtox_1504
KEGG: mxa:MXAN_1821 hypothetical protein.
 
    0.789
Dtox_1498
KEGG: sfu:Sfum_3819 hypothetical protein.
 
    0.661
Dtox_3909
KEGG: glo:Glov_2990 hypothetical protein.
       0.535
Dtox_3910
KEGG: cjd:JJD26997_1909 prophage ps3 protein 01.
       0.535
Dtox_3912
Hypothetical protein.
       0.509
Dtox_1525
PFAM: Recombinase; KEGG: mgm:Mmc1_1125 recombinase.
  
     0.479
Dtox_1499
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: net:Neut_0115 DNA-cytosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.454
Dtox_3914
Sigma 54 interacting domain protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypg:YpAngola_0071 ABC transporter, ATP- binding protein.
 
     0.436
Dtox_1524
PFAM: Resolvase domain; Recombinase; KEGG: oan:Oant_1563 resolvase domain protein.
  
     0.418
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.