STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4059KEGG: noc:Noc_1504 putative transposase. (332 aa)    
Predicted Functional Partners:
Dtox_4045
KEGG: scl:sce5012 hypothetical protein.
  
     0.558
Dtox_0719
PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: sus:Acid_7079 hypothetical protein.
  
     0.541
Dtox_2980
TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1790 CRISPR-associated RAMP protein, Cmr1 family.
  
     0.538
Dtox_0679
Hypothetical protein; KEGG: neu:NE0492 putative transposase.
  
     0.535
Dtox_2975
TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1795 CRISPR-associated RAMP protein, Cmr6 family.
  
     0.496
Dtox_2977
TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1793 CRISPR-associated RAMP protein, Cmr4 family.
  
     0.488
Dtox_0677
Hypothetical protein.
  
     0.487
Dtox_4060
KEGG: hip:CGSHiEE_04170 hypothetical protein.
       0.471
Dtox_1540
PFAM: helicase domain protein; SMART: helicase domain protein; KEGG: noc:Noc_0545 helicase-like.
  
     0.435
Dtox_1413
KEGG: dat:HRM2_19390 hypothetical protein.
  
     0.420
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.