STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cslBHypothetical protein; Cleaves the glycosaminoglycan, dermatan sulfate. (506 aa)    
Predicted Functional Partners:
Phep_0788
RagB/SusD domain protein; PFAM: RagB, SusD and hypothetical proteins.
       0.714
Phep_0787
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
       0.664
Phep_1026
Cupin 2 conserved barrel domain protein; PFAM: AraC-like ligand binding domain.
 
     0.648
Phep_0790
PFAM: Glycosyl Hydrolase Family 88.
       0.629
Phep_2692
Conserved hypothetical protein.
 
    0.581
Phep_2696
Hypothetical protein.
     0.545
Phep_0456
PFAM: Major Facilitator Superfamily.
 
    0.502
cslA
PFAM: Polysaccharide lyase family 8, super-sandwich domain; Polysaccharide lyase family 8, C-terminal beta-sandwich domain; Polysaccharide lyase family 8, N terminal alpha-helical domain.
       0.424
Phep_1023
PFAM: Major Facilitator Superfamily.
 
    0.416
Phep_3116
PFAM: Major Facilitator Superfamily.
 
    0.412
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.