STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2214Glycosyl hydrolase BNR repeat-containing protein; PFAM: BNR/Asp-box repeat. (549 aa)    
Predicted Functional Partners:
Phep_2212
Kelch repeat-containing protein; PFAM: Kelch motif.
 
     0.908
Phep_2213
N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.
 
   
 0.832
Phep_3569
Kelch repeat-containing protein; PFAM: Kelch motif.
 
     0.757
Phep_2215
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
     0.741
Phep_1706
Glycoside hydrolase clan GH-D; PFAM: Melibiase.
  
  
  0.734
Phep_3255
Kelch repeat-containing protein; PFAM: Kelch motif.
 
     0.728
Phep_3852
PFAM: Sulfatase.
  
  0.727
Phep_2211
PFAM: Major Facilitator Superfamily.
 
     0.719
Phep_2890
PFAM: Sulfatase.
  
 
  0.703
Phep_2831
PFAM: Sulfatase.
    
  0.661
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.