STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2804Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family. (324 aa)    
Predicted Functional Partners:
Phep_2803
PFAM: ABC transporter.
 0.997
Phep_2801
Periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family.
 
 0.992
Phep_3766
PFAM: ABC transporter.
 0.988
Phep_3767
Periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family.
 0.986
Phep_3765
Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.909
Phep_2802
PFAM: Predicted periplasmic lipoprotein (DUF2291).
 
     0.901
Phep_2805
PFAM: FGGY family of carbohydrate kinases, C-terminal domain; FGGY family of carbohydrate kinases, N-terminal domain; TIGRFAM: glycerol kinase; Belongs to the FGGY kinase family.
 
  
 0.828
Phep_2806
PFAM: Protein of unknown function (DUF1593).
 
     0.820
Phep_2798
L-fucose isomerase-like protein; PFAM: L-fucose isomerase, C-terminal domain; L-fucose isomerase, second N-terminal domain.
 
     0.743
Phep_2800
Transketolase central region; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain.
 
    0.701
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
Server load: low (28%) [HD]