STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2816Beta-galactosidase; PFAM: Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family. (1171 aa)    
Predicted Functional Partners:
Phep_2820
Hypothetical protein.
 
     0.960
Phep_2819
Conserved hypothetical protein.
 
     0.957
Phep_1042
PFAM: ROK family.
  
  
 0.918
Phep_2758
Hypothetical protein.
    0.911
Phep_2135
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.907
Phep_2727
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.907
Phep_0679
PFAM: ROK family.
     
 0.901
Phep_2823
PFAM: ROK family.
     
 0.901
Phep_2817
Alpha-L-fucosidase; PFAM: Glycosyl hydrolases family 2, sugar binding domain.
 
     0.882
Phep_2818
PFAM: Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.867
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.