STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3886PFAM: Glycosyl hydrolases family 2, sugar binding domain. (986 aa)    
Predicted Functional Partners:
Phep_3885
PFAM: L-rhamnose-proton symport protein (RhaT).
 
     0.895
Phep_3887
PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain.
 
     0.857
Phep_3882
PFAM: FGGY family of carbohydrate kinases, N-terminal domain.
 
   
 0.758
Phep_3884
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
     0.752
Phep_3883
PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype.
 
     0.724
Phep_2430
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.719
Phep_3881
PFAM: Bacterial regulatory proteins, gntR family.
 
     0.696
Phep_2759
PFAM: Alpha-L-rhamnosidase N-terminal domain; Bacterial alpha-L-rhamnosidase.
 
     0.651
Phep_0964
PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain.
  
     0.601
Phep_2781
PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain.
 
     0.591
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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