STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3946PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family. (396 aa)    
Predicted Functional Partners:
Phep_3947
PFAM: Polysaccharide biosynthesis protein.
 
 
 0.986
Phep_3944
Spore coat polysaccharide biosynthesis protein predicted glycosyltransferase.
 
  
 0.954
Phep_3942
N-acylneuraminate-9-phosphate synthase; PFAM: SAF domain; NeuB family.
 
  
 0.951
Phep_3941
PFAM: Cytidylyltransferase.
 
  
 0.889
Phep_3940
Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
 
    0.828
Phep_3943
PFAM: Formyl transferase, C-terminal domain; Formyl transferase.
  
  
 0.826
Phep_3939
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
 
    
0.802
Phep_3945
Hypothetical protein.
       0.773
Phep_3919
PFAM: CoA binding domain; Polysaccharide biosynthesis protein.
 
  
 0.737
Phep_3948
Lipopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein.
     
 0.731
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.