STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3976PFAM: Alpha-L-rhamnosidase N-terminal domain; Bacterial alpha-L-rhamnosidase. (796 aa)    
Predicted Functional Partners:
Phep_3974
PFAM: Bacterial alpha-L-rhamnosidase.
 
    
0.813
Phep_3975
Conserved hypothetical protein.
       0.773
Phep_3978
PFAM: Glycosyl Hydrolase Family 88.
 
     0.725
Phep_3887
PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain.
 
   
 0.700
Phep_3977
PFAM: Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
       0.689
Phep_2105
TIGRFAM: alpha-glucan phosphorylases.
  
 
 0.672
Phep_3973
PFAM: Glycosyl hydrolases family 2, sugar binding domain.
 
     0.617
Phep_2203
Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.560
Phep_3979
PFAM: Polysaccharide lyase family 8, super-sandwich domain; Polysaccharide lyase family 8, N terminal alpha-helical domain; Polysaccharide lyase family 8, C-terminal beta-sandwich domain.
       0.543
Phep_3980
RagB/SusD domain protein; PFAM: RagB, SusD and hypothetical proteins.
       0.523
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.