STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_1994TIGRFAM: L-fucose transporter; glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: nar:Saro_2428 L-fucose permease. (432 aa)    
Predicted Functional Partners:
Cpin_1991
PFAM: protein of unknown function DUF718; KEGG: spe:Spro_0643 hypothetical protein.
 
  
 0.795
Cpin_1992
PFAM: amidohydrolase 2; KEGG: pat:Patl_0798 amidohydrolase 2.
 
  
 0.767
Cpin_1993
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bvi:Bcep1808_3383 short chain dehydrogenase.
 
    0.741
Cpin_4919
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.486
Cpin_5086
PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRA2340 transport protein.
 
  
 0.415
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.