STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_4501Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: pat:Patl_0810 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family. (316 aa)    
Predicted Functional Partners:
Cpin_2114
PFAM: glycoside hydrolase family 43; KEGG: sus:Acid_2993 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
     0.864
Cpin_3438
PFAM: Glycosyl hydrolase family 32 domain protein; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.737
Cpin_4502
Hypothetical protein.
       0.709
Cpin_4240
KEGG: pat:Patl_2657 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
 
   
 0.678
Cpin_4503
PFAM: RagB/SusD domain protein.
       0.676
Cpin_4504
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
       0.667
Cpin_5393
PFAM: glycoside hydrolase family 26; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.660
Cpin_4845
KEGG: pzu:PHZ_c2479 hypothetical protein.
 
     0.601
Cpin_7192
Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B.
  
     0.571
Cpin_6171
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.563
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.