STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_4846Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: sde:Sde_0822 alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (367 aa)    
Predicted Functional Partners:
Cpin_4847
PFAM: protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 2 sugar binding; KEGG: cja:CJA_3164 sialic acid-specific 9-O- acetylesterase; Belongs to the glycosyl hydrolase 2 family.
 
     0.918
Cpin_4845
KEGG: pzu:PHZ_c2479 hypothetical protein.
 
     0.916
Cpin_4240
KEGG: pat:Patl_2657 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
 
   
 0.766
Cpin_2114
PFAM: glycoside hydrolase family 43; KEGG: sus:Acid_2993 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
     0.732
Cpin_7192
Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B.
  
     0.642
Cpin_2971
PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; protein of unknown function DUF1080; SMART: cellulose binding type IV; KEGG: sde:Sde_0216 hypothetical protein.
  
     0.609
Cpin_5511
PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_3601 beta-xylosidase/alpha-L- arabinfuranosidase, putative, gly43I; Belongs to the glycosyl hydrolase 43 family.
     0.579
Cpin_4844
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: dde:Dde_3654 LacI family transcription regulator.
     
 0.572
Cpin_0715
PFAM: Pectate lyase; KEGG: scl:sce4938 pectate lyase.
  
     0.547
Cpin_5543
Alpha-L-fucosidase; KEGG: bha:BH0842 hypothetical protein.
  
     0.544
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.