STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_6455PFAM: Proline dehydrogenase; KEGG: hypothetical protein. (392 aa)    
Predicted Functional Partners:
Cpin_5491
TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: dps:DP2491 delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.941
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.932
Cpin_0261
Proline-specific peptidase; Releases the N-terminal proline from various substrates.
     
  0.900
Cpin_4568
PFAM: alpha/beta hydrolase fold protein; KEGG: bce:BC2171 proline iminopeptidase.
     
  0.900
Cpin_5122
PFAM: alpha/beta hydrolase fold protein; KEGG: bcb:BCB4264_A2370 proline iminopeptidase.
     
  0.900
Cpin_6812
PFAM: Na+/solute symporter; KEGG: aba:Acid345_3352 SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.843
Cpin_3541
PFAM: Na+/solute symporter; KEGG: vsp:VS_1241 putative sodium/substrate symport; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.816
Cpin_0917
acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.
 
  
 0.716
Cpin_6916
Citrate (Si)-synthase; KEGG: GK16526 gene product from transcript GK16526- RA; TIGRFAM: citrate (Si)-synthase; PFAM: Citrate synthase; Belongs to the citrate synthase family.
   
  
 0.645
Cpin_2612
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ank:AnaeK_1000 cytochrome bd ubiquinol oxidase subunit I.
   
 
 0.556
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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