STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_6813PFAM: glycoside hydrolase family 9; polysaccharide deacetylase; KEGG: cja:CJA_1633 endo-1,4-beta glucanase, putative, cel9B. (815 aa)    
Predicted Functional Partners:
Cpin_3128
PFAM: glycosyl transferase family 2; KEGG: scl:sce4866 integral membrane glycosyltransferase; Belongs to the glycosyl hydrolase 26 family.
  
 
 0.943
Cpin_6252
Cellulase; PFAM: glycoside hydrolase family 5; KEGG: aba:Acid345_1689 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.916
Cpin_1838
Beta-galactosidase; KEGG: rfr:Rfer_1111 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.
    
 0.908
Cpin_0323
PFAM: glycoside hydrolase family 3 domain protein; KEGG: pat:Patl_3730 glycoside hydrolase family protein.
     
 0.903
Cpin_1816
PFAM: glycoside hydrolase family 3 domain protein; KEGG: sal:Sala_1014 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 3 family.
     
 0.903
Cpin_2009
Cellulase; PFAM: glycoside hydrolase family 5; coagulation factor 5/8 type domain protein; KEGG: bsu:BSU18130 endo-1,4-beta-glucanase.
     
 0.903
Cpin_2580
PFAM: glycoside hydrolase family 18; glycoside hydrolase family 5; SMART: chitinase II; KEGG: hch:HCH_05453 chitinase.
     
 0.903
Cpin_2862
PFAM: glycoside hydrolase family 3 domain protein; KEGG: hypothetical protein.
     
 0.903
Cpin_4149
PFAM: glycoside hydrolase family 5; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cja:CJA_2760 cellulase, putative, cel5G; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.903
Cpin_4289
PFAM: glycoside hydrolase family 5; Fibronectin type III domain protein; KEGG: cja:CJA_3369 cellulase, putative, cel5C.
     
 0.903
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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