B0DCJ5_LACBS protein (Laccaria bicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0DCJ5_LACBS

Predicted protein. (276 aa)

Predicted Functional Partners:

PAFB16201

0.992

B0CRB3_LACBS

0.924

B0D0L9_LACBS

0.913

GTG16201

0.913

B0CU29_LACBS

0.912

B0D9Y7_LACBS

0.912

B0DKE6_LACBS

0.912

GTC16201

0.911

B0DK51_LACBS

0.906

B0CRA1_LACBS

0.902

Your Current Organism:

Laccaria bicolor

NCBI taxonomy Id: 486041
Other names: L. bicolor S238N-H82, Laccaria bicolor S238N-H82

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0CRA1_LACBS	B0CRB3_LACBS	B0CRA1	B0CRB3	Predicted protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0CRA1_LACBS	B0CU29_LACBS	B0CRA1	B0CU29	Predicted protein.	Predicted protein.	0.999
B0CRA1_LACBS	B0D0L9_LACBS	B0CRA1	B0D0L9	Predicted protein.	Predicted protein.	0.999
B0CRA1_LACBS	B0D9Y7_LACBS	B0CRA1	B0D9Y7	Predicted protein.	Predicted protein.	0.999
B0CRA1_LACBS	B0DCJ5_LACBS	B0CRA1	B0DCJ5	Predicted protein.	Predicted protein.	0.902
B0CRA1_LACBS	B0DK51_LACBS	B0CRA1	B0DK51	Predicted protein.	Predicted protein.	0.950
B0CRA1_LACBS	B0DKE6_LACBS	B0CRA1	B0DKE6	Predicted protein.	Predicted protein.	0.999
B0CRA1_LACBS	GTC16201	B0CRA1	B0D3X0	Predicted protein.	Predicted protein.	0.950
B0CRA1_LACBS	GTG16201	B0CRA1	B0DK58	Predicted protein.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.993
B0CRA1_LACBS	PAFB16201	B0CRA1	B0CUC1	Predicted protein.	RNA polymerase II-associated protein.	0.989
B0CRB3_LACBS	B0CRA1_LACBS	B0CRB3	B0CRA1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Predicted protein.	0.999
B0CRB3_LACBS	B0CU29_LACBS	B0CRB3	B0CU29	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Predicted protein.	0.999
B0CRB3_LACBS	B0D0L9_LACBS	B0CRB3	B0D0L9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Predicted protein.	0.999
B0CRB3_LACBS	B0D9Y7_LACBS	B0CRB3	B0D9Y7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Predicted protein.	0.999
B0CRB3_LACBS	B0DCJ5_LACBS	B0CRB3	B0DCJ5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Predicted protein.	0.924
B0CRB3_LACBS	B0DK51_LACBS	B0CRB3	B0DK51	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Predicted protein.	0.959
B0CRB3_LACBS	B0DKE6_LACBS	B0CRB3	B0DKE6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Predicted protein.	0.999
B0CRB3_LACBS	GTC16201	B0CRB3	B0D3X0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Predicted protein.	0.977
B0CRB3_LACBS	GTG16201	B0CRB3	B0DK58	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.997
B0CRB3_LACBS	PAFB16201	B0CRB3	B0CUC1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II-associated protein.	0.992