STRINGSTRING
rsd1 protein (Schizosaccharomyces pombe) - STRING interaction network
"rsd1" - RNA-binding protein Rsd1 in Schizosaccharomyces pombe
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsd1RNA-binding protein Rsd1 (predicted) (603 aa)    
Predicted Functional Partners:
dre4
Pre-mRNA-splicing factor dre4; Component of the spliceosome involved in mRNA processing (411 aa)
     
 
  0.999
itr2
Myo-inositol transporter 2; Transporter for myo-inositol (557 aa)
     
      0.999
dsk1
Protein kinase dsk1; May play an important role in mitotic control by altering cellular location, degree of phosphorylation and kinase activity. Abundant expression accelerates the exit when cells are in M-phase and also delays the entry into mitosis when cells are in G2. Phosphorylates prp2 in vitro and so may have a role in co- ordinating pre-mRNA splicing with the progression of the cell division cycle; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family (544 aa)
     
 
  0.944
prp2
Splicing factor U2AF 59 kDa subunit; Necessary for the splicing of pre-mRNA. The SF1-U2AF59- U2AF23 complex has a role in the recognition of the branch site (5’-UACUAAC-3’), the pyrimidine tract and the 3’-splice site at the 3’-end of introns; Belongs to the splicing factor SR family (517 aa)
     
 
0.936
cwf2
Pre-mRNA-splicing factor cwf2; Involved in the first step of pre-mRNA splicing. Required for cell growth and cell cycle control. Plays a role in the levels of the U1, U4, U5 and U6 snRNAs and the maintenance of the U4/U6 snRNA complex. May provide the link between the "nineteen complex" NTC spliceosome protein complex and the spliceosome through the U6 snRNA. Associates predominantly with U6 snRNAs in assembled active spliceosomes. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre- mRNA intron near the 5’ splice site during the activation and catalyti [...] (388 aa)
     
 
  0.927
prp19
Pre-mRNA-processing factor 19; Probable ubiquitin-protein ligase involved in pre-mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. May also function in DNA repair; Belongs to the WD repeat PRP19 family (488 aa)
     
      0.922
prp10
U2 snRNP component prp10; Contacts pre-mRNA on both sides of the branch site early in spliceosome assembly; Belongs to the SF3B1 family (1166 aa)
     
 
  0.889
SPAC57A7.13.1
RNA-binding protein, involved in splicing (predicted) (565 aa)
     
   
  0.871
cdc5
Pre-mRNA-splicing factor cdc5; Involved in mRNA splicing and cell cycle control; Belongs to the CEF1 family (757 aa)
     
      0.840
usp102
U1 small nuclear ribonucleoprotein usp102; Involved in nuclear mRNA splicing (249 aa)
     
 
  0.816
Your Current Organism:
Schizosaccharomyces pombe
NCBI taxonomy Id: 4896
Other names: CBS 356, CCRC 21461, DBVPG 6277, JCM 8274, MUCL 30245, NRRL Y-12796, S. pombe, Schizosaccharomyces malidevorans, Schizosaccharomyces pombe, fission yeast
Server load: low (15%) [HD]