STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSCI55140.1DUF2236 domain-containing protein. (1171 aa)    
Predicted Functional Partners:
SSCI86890.1
Uncharacterized protein.
    
 0.971
SSCI58000.1
Uncharacterized protein.
   
 0.967
SSCI14380.1
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.965
SSCI67510.1
JmjC domain-containing protein.
    
 0.965
SSCI52510.1
Histone H2B; Belongs to the histone H2B family.
   
 0.964
SSCI81420.1
Histone H2A; Belongs to the histone H2A family.
   
 0.954
SSCI45000.1
Related to SET2-Histone methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.
   
 0.945
SSCI35330.1
Probable Chromatin assembly factor 1 subunit c.
   
 0.944
SSCI29230.1
Regulator Ustilago maydis 1 protein (Rum1).
   
 0.943
SSCI37380.1
Uncharacterized protein.
   
 0.943
Your Current Organism:
Sporisorium scitamineum
NCBI taxonomy Id: 49012
Other names: S. scitamineum, Sporisorium scitamineum (Syd.) M. Piepenbr., M. Stoll & Oberw., 2002, Ustilago scitaminea, Ustilago scitaminea Syd.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.