STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF53714.1GPW/gp25 family protein; PFAM: GPW/gp25; KEGG: vsp:VS_1329 hypothetical protein. (140 aa)    
Predicted Functional Partners:
AEF53716.1
KEGG: vsp:VS_1327 hypothetical protein.
  
  
 0.858
AEF53715.1
KEGG: vsp:VS_1328 hypothetical protein; TIGRFAM: Type VI secretion system, VCA0110; PFAM: Type VI secretion system, VCA0110.
  
  
 0.853
AEF53713.1
PFAM: Protein of unknown function DUF877; KEGG: vsp:VS_1330 hypothetical protein.
  
  
 0.848
AEF53717.1
TIGRFAM: ATPase, type VI secretion system, ClpV1; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: vsp:VS_1326 putative protein disaggregation chaperone; SMART: ATPase, AAA+ type, core; Belongs to the ClpA/ClpB family.
  
  
 0.812
AEF53722.1
KEGG: vsp:VS_1319 hypothetical protein; TIGRFAM: Type IV / VI secretion system, DotU; PFAM: Type IV / VI secretion system, DotU; Sporulation/cell division region, bacteria.
  
  
 0.805
AEF53720.1
TIGRFAM: Type VI secretion system, lipoprotein VCA0113; KEGG: vsp:VS_1321 hypothetical protein.
  
  
 0.802
AEF53711.1
Type VI secretion protein, VC_A0107 family; KEGG: vsp:VS_1332 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP028301; PFAM: Uncharacterised conserved protein UCP028301.
  
  
 0.792
AEF53718.1
KEGG: vsp:VS_1323 hypothetical protein.
       0.789
AEF53721.1
Type VI secretion protein, VC_A0114 family; KEGG: vsp:VS_1320 hypothetical protein; TIGRFAM: Protein of unknown function DUF876, bacterial; PFAM: Protein of unknown function DUF876, bacterial.
  
  
 0.770
AEF53712.1
Type VI secretion protein, EvpB/VC_A0108 family; KEGG: vsp:VS_1331 hypothetical protein; TIGRFAM: Protein of unknown function DUF877; PFAM: Protein of unknown function DUF877.
  
  
 0.742
Your Current Organism:
Marinomonas posidonica
NCBI taxonomy Id: 491952
Other names: M. posidonica IVIA-Po-181, Marinomonas posidonica IVIA-Po-181, Marinomonas posidonica str. IVIA-Po-181, Marinomonas posidonica strain IVIA-Po-181, Marinomonas sp. IVIA-Po-181
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