STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC1Structural maintenance of chromosomes protein. (1240 aa)    
Predicted Functional Partners:
PICST_28736
SCD domain-containing protein.
   
 0.999
PICST_53137
Uncharacterized protein.
   
 0.999
PICST_68402
Sister chromatid cohesion protein.
   
 0.998
SMC3
Chromosome condensation and segregation protein.
  
0.993
SPO69
Sporulation protein involved in sister chromatid cohesion.
   
 0.991
CDC5
Serine/threonine-protein kinase.
   
 0.986
ESP1
Separin protein.
   
 0.983
PICST_61740
Precocious dissociation of sister chromatids.
   
 0.983
PICST_44736
SMC_N domain-containing protein.
  
0.967
ECO1
N-acetyltransferase ECO1 (Establishment of cohesion protein 1).
   
 0.892
Your Current Organism:
Scheffersomyces stipitis
NCBI taxonomy Id: 322104
Other names: Pichia stipitis CBS 6054, S. stipitis CBS 6054, Scheffersomyces stipitis CBS 6054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.