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STRINGSTRING
XP_003680216.1 protein (Torulaspora delbrueckii) - STRING interaction network
"XP_003680216.1" - RNA helicase in Torulaspora delbrueckii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_003680216.1RNA helicase; Similar to Saccharomyces cerevisiae SPB4 (YFL002C); ancestral locus Anc_8.87 (603 aa)    
Predicted Functional Partners:
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily (829 aa)
     
 
  0.987
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome (588 aa)
     
 
  0.984
XP_003682683.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae SDA1 (YGR245C); ancestral locus Anc_5.81 (737 aa)
     
 
  0.984
XP_003682294.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae ENP2 (YGR145W); ancestral locus Anc_4.77 (694 aa)
     
 
  0.982
XP_003681997.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae BMS1 (YPL217C); ancestral locus Anc_6.234 (1167 aa)
     
 
  0.977
XP_003681765.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae BFR2 (YDR299W); ancestral locus Anc_5.316 (523 aa)
     
      0.975
XP_003681743.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae RRP3 (YHR065C); ancestral locus Anc_5.337; Belongs to the DEAD box helicase family (501 aa)
   
 
0.964
XP_003681334.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae PUF6 (YDR496C); ancestral locus Anc_3.85 (648 aa)
     
      0.962
XP_003681988.1
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
 
  0.955
XP_003683239.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae UTP7 (YER082C); ancestral locus Anc_7.275 (544 aa)
     
      0.954
Your Current Organism:
Torulaspora delbrueckii
NCBI taxonomy Id: 4950
Other names: Candida colliculosa, Saccharomyces delbrueckii, Saccharomyces fermentati, Saccharomyces rosei, T. delbrueckii, Torulaspora delbrueckii, Torulaspora sp. R3DFM2, WM 821
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