• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
XP_003681560.1 protein (Torulaspora delbrueckii) - STRING interaction network
"XP_003681560.1" - tRNA-dihydrouridine(47) synthase [NAD(P)(+)] in Torulaspora delbrueckii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_003681560.1tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs (637 aa)    
Predicted Functional Partners:
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome (798 aa)
     
        0.724
XP_003680515.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae NOP2 (YNL061W); ancestral locus Anc_2.247; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (614 aa)
     
 
  0.622
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome (451 aa)
     
        0.622
XP_003681549.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae UTP21 (YLR409C); ancestral locus Anc_4.275 (940 aa)
     
      0.621
XP_003681810.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae PPA1 (YHR026W); ancestral locus Anc_5.270; Belongs to the V-ATPase proteolipid subunit family (214 aa)
 
 
        0.578
XP_003680985.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae BNA3 (YJL060W); ancestral locus Anc_1.321 (443 aa)
   
   
  0.578
XP_003679980.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae YHL017W and PTM1 (YKL039W); ancestral locus Anc_2.552 (504 aa)
           
  0.561
XP_003679779.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae NCL1 (YBL024W); ancestral locus Anc_8.171; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (673 aa)
     
 
  0.533
XP_003680292.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae PWP1 (YLR196W); ancestral locus Anc_7.356 (563 aa)
     
        0.523
XP_003680313.1
Uncharacterized protein; Similar to Saccharomyces cerevisiae YDL156W; ancestral locus Anc_7.333 (526 aa)
           
  0.499
Your Current Organism:
Torulaspora delbrueckii
NCBI taxonomy Id: 4950
Other names: Candida colliculosa, Saccharomyces delbrueckii, Saccharomyces fermentati, Saccharomyces rosei, T. delbrueckii, Torulaspora delbrueckii, Torulaspora sp. R3DFM2, WM 821
Server load: low (16%) [HD]