STRINGSTRING
TRM5 protein (Torulaspora delbrueckii) - STRING interaction network
"TRM5" - Hypothetical protein in Torulaspora delbrueckii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRM5Hypothetical protein; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (493 aa)    
Predicted Functional Partners:
XP_003679328.1
Hypothetical protein (134 aa)
     
 
  0.578
XP_003681983.1
Hypothetical protein (761 aa)
     
   
  0.572
XP_003679779.1
Hypothetical protein (673 aa)
     
   
  0.536
XP_003683181.1
Hypothetical protein (379 aa)
     
   
  0.522
XP_003682423.1
Hypothetical protein (546 aa)
     
   
  0.518
TRM7
Hypothetical protein; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (299 aa)
     
   
  0.517
XP_003682810.1
Hypothetical protein; S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3’-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Catalyzes the transfer of the alpha-amino-alpha- carboxypropyl (acp) group from S-adenosyl-L-methionine to the C-7 position of 4-demethylwyosine (imG-14) to produce wybutosine-86 (407 aa)
     
   
  0.509
XP_003682018.1
Hypothetical protein (239 aa)
   
   
  0.502
XP_003681315.1
Hypothetical protein (320 aa)
     
   
  0.483
XP_003678950.1
Hypothetical protein (272 aa)
     
 
  0.479
Your Current Organism:
Torulaspora delbrueckii
NCBI taxonomy Id: 4950
Other names: Candida colliculosa, Saccharomyces fermentati, Saccharomyces rosei, T. delbrueckii, Torulaspora, Torulaspora delbrueckii
Server load: low (9%) [HD]