STRINGSTRING
XP_500648.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_500648.1" - YALI0B08624p in Yarrowia lipolytica
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_500648.1YALI0B08624p (490 aa)    
Predicted Functional Partners:
XP_502807.2
60S ribosomal protein L12 (165 aa)
       
 
  0.513
XP_505975.1
YALI0F28061p (454 aa)
       
 
  0.475
XP_503895.1
YALI0E13277p (1056 aa)
     
      0.447
XP_500490.1
YALI0B04334p (1102 aa)
     
      0.447
BCP1
YALI0D27324p; Involved in nuclear export, actin cytoskeleton organization and vesicular transport (302 aa)
       
 
  0.445
set-2
YALI0E18260p; Histone methyltransferase that methylates histone H3 to form H3K36me. Involved in transcription elongation as well as in transcription repression (By similarity) (768 aa)
     
   
  0.436
HHT1
YALI0F25905p; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (By similarity) (139 aa)
       
  0.423
CSE4
YALI0B13508p; Histone H3-like variant which exclusively replaces conventional H3 in the nucleosome core of centromeric chromatin at the inner plate of the kinetochore. Required for recruitment and assembly of kinetochore proteins, mitotic progression and chromosome segregation. May serve as an epigenetic mark that propagates centromere identity through replication and cell division (By similarity) (150 aa)
       
  0.423
RMT2
YALI0C14718p; S-adenosyl-L-methionine-dependent protein-arginine N- methyltransferase that methylates the delta-nitrogen atom of arginine residues to form N5-methylarginine (type IV) in target proteins. Monomethylates ribosomal protein L12 (475 aa)
     
   
  0.409
XP_504771.1
YALI0E34397p (492 aa)
           
  0.400
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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