STRINGSTRING
XP_500803.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_500803.1" - YALI0B12496p in Yarrowia lipolytica
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_500803.1YALI0B12496p (464 aa)    
Predicted Functional Partners:
CCR4
YALI0B15147p; Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. Ccr4 has 3’-5’ RNase activity with a strong preference for polyadenylated substrates and also low exonuclease activity towards single-stranded DNA. Discovered because of its role in the control of ADH2 gene expression. It is required for the expression of genes involved in non-fermentative growth (By similarity) (705 aa)
     
  0.992
XP_505772.1
YALI0F23045p (2017 aa)
     
  0.990
XP_504943.1
YALI0F03344p (278 aa)
     
  0.973
XP_503626.1
YALI0E06435p (626 aa)
       
  0.970
XP_501245.1
YALI0B22968p (247 aa)
     
  0.957
XP_501608.1
YALI0C08657p (455 aa)
     
  0.936
XP_504890.1
YALI0F02101p (495 aa)
     
  0.845
PAB1
YALI0C00539p; Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. In the nucleus, involved in both mRNA cleavage and polyadenylation. Is also required for efficient mRNA export to the cytoplasm. Acts in concert with a poly(A)-specific nuclease (PAN) to affect poly(A) tail shortening, which may occur concomitantly with either nucleocytoplasmic mRNA transport or translational initiation. In the cytoplasm, stimulates translation initiation and regulates mRNA decay through translation t [...] (629 aa)
     
  0.826
XP_503837.1
YALI0E11869p (1375 aa)
     
 
  0.769
XP_501072.1
YALI0B18759p (2052 aa)
       
  0.756
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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