STRINGSTRING
XP_500878.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_500878.1" - YALI0B14311p in Yarrowia lipolytica
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_500878.1YALI0B14311p (166 aa)    
Predicted Functional Partners:
XP_504431.1
YALI0E26587p (258 aa)
       
  0.988
XP_501413.1
YALI0C03784p (290 aa)
     
  0.980
XP_504532.1
YALI0E29007p (696 aa)
       
  0.976
XP_500506.1
YALI0B04752p; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5’-ends. Also a component of RNase MRP (157 aa)
       
  0.951
XP_503390.1
YALI0E00858p (354 aa)
       
  0.928
XP_499679.1
YALI0A02178p (145 aa)
       
  0.896
XP_505119.1
YALI0F07447p (250 aa)
       
    0.852
XP_002143109.1
YALI0F13068p (136 aa)
         
    0.800
SNU13
Small nucleolar ribonucleoprotein SNU13; Common component of the spliceosome and rRNA processing machinery. In association with the spliceosomal U4/U6.U5 tri-snRNP particle, required for splicing of pre-mRNA. In association with box C/D snoRNPs, required for processing of pre-ribosomal RNA (rRNA) and site-specific 2’-O-methylation of substrate RNAs. Essential for the accumulation and stability of U4 snRNA, U6 snRNA, and box C/D snoRNAs (By similarity) (126 aa)
       
  0.567
XP_501139.1
40S ribosomal protein S19 (147 aa)
       
    0.508
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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