STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YALI0_C06061gHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (433 aa)    
Predicted Functional Partners:
YALI0_F11165g
YALI0F11165p.
   
 0.938
YALI0_F25663g
YALI0F25663p.
   
 0.903
YALI0_C14058g
YALI0C14058p.
   
 0.880
YALI0_B05126g
YALI0B05126p; Belongs to the cytochrome P450 family.
    
 
 0.880
GCN5
Histone acetyltransferase GCN5; Acetylates histone H2B to form H2BK11ac and H2BK16ac, histone H3 to form H3K14ac, with a lower preference histone H4 to form H4K8ac and H4K16ac, and contributes to H2A.Z acetylation. Acetylation of histones gives a specific tag for epigenetic transcription activation (By similarity).
   
 0.827
YALI0_D26972g
YALI0D26972p.
   
 0.803
YALI0_E12991g
YALI0E12991p.
   
 
 0.790
YALI0_B13750g
YALI0B13750p.
   
 0.783
YALI0_A01331g
YALI0A01331p.
   
 0.783
HAT2
Histone acetyltransferase type B subunit 2; Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing (By similarity).
   
 0.780
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 284591
Other names: Y. lipolytica CLIB122, Yarrowia lipolytica CLIB122
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