STRINGSTRING
XP_502076.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_502076.1" - YALI0C21131p in Yarrowia lipolytica
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_502076.1YALI0C21131p (724 aa)    
Predicted Functional Partners:
XP_504370.1
YALI0E24827p (406 aa)
     
  0.993
XP_500136.2
YALI0A16588p (1632 aa)
     
  0.974
XP_501695.1
YALI0C10824p (186 aa)
     
  0.973
XP_505140.1
YALI0F07909p (221 aa)
     
  0.942
XP_002142994.1
YALI0A20867p (223 aa)
     
  0.942
SUB2
YALI0A11157p; ATP-binding RNA helicase involved in transcription elongation and required for the export of mRNA out of the nucleus. SUB2 plays also a role in pre-mRNA splicing and spliceosome assembly. May be involved in rDNA and telomeric silencing, and maintenance of genome integrity (By similarity) (441 aa)
     
  0.826
XP_500029.1
YALI0A13101p (867 aa)
     
  0.814
XP_500756.1
YALI0B11352p (1111 aa)
     
  0.763
FAL1
YALI0F02695p; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity) (397 aa)
     
  0.658
TIF1
YALI0B20922p; ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5’-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity) (395 aa)
     
  0.658
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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