STRINGSTRING
XP_502208.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_502208.1" - YALI0C24057p in Yarrowia lipolytica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_502208.1YALI0C24057p (201 aa)    
Predicted Functional Partners:
XP_503903.1
YALI0E13486p (485 aa)
     
  0.993
XP_505678.1
YALI0F20768p (155 aa)
     
  0.990
XP_503266.1
YALI0D25234p (448 aa)
     
  0.987
XP_501296.1
YALI0C00693p (62 aa)
     
  0.973
XP_501884.1
rRNA methyltransferase NOP1 (321 aa)
   
 
  0.968
XP_505735.1
YALI0F22077p (583 aa)
       
 
  0.946
XP_501420.1
YALI0C03982p (137 aa)
     
      0.914
CWC2
YALI0F29073p; Involved in the first step of pre-mRNA splicing. Required for cell growth and cell cycle control. Plays a role in the levels of the U1, U4, U5 and U6 snRNAs and the maintenance of the U4/U6 snRNA complex. May provide the link between the "nineteen complex" NTC spliceosome protein complex and the spliceosome through the U6 snRNA. Associates predominantly with U6 snRNAs in assembled active spliceosomes. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre- mRNA intron near the 5’ splice site during the activation and catalytic phases of the s [...] (382 aa)
     
 
  0.913
SNU13
Small nucleolar ribonucleoprotein SNU13; Common component of the spliceosome and rRNA processing machinery. In association with the spliceosomal U4/U6.U5 tri-snRNP particle, required for splicing of pre-mRNA. In association with box C/D snoRNPs, required for processing of pre-ribosomal RNA (rRNA) and site-specific 2’-O-methylation of substrate RNAs. Essential for the accumulation and stability of U4 snRNA, U6 snRNA, and box C/D snoRNAs (By similarity) (126 aa)
     
  0.907
XP_503358.1
YALI0D27346p (491 aa)
       
      0.898
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
Server load: low (2%) [HD]