STRINGSTRING
XP_503222.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_503222.1" - YALI0D24211p in Yarrowia lipolytica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_503222.1YALI0D24211p (464 aa)    
Predicted Functional Partners:
XP_500782.1
YALI0B11968p (898 aa)
     
      0.780
XP_500756.1
YALI0B11352p (1111 aa)
     
      0.663
XP_503472.1
YALI0E02750p (549 aa)
     
      0.630
XP_502367.1
YALI0D03531p (1175 aa)
     
  0.593
BRE1
YALI0B09559p; E3 ubiquitin-protein ligase that mediates monoubiquitination of histone H2B to form H2BK123ub1. H2BK123ub1 gives a specific tag for epigenetic transcriptional activation and is also a prerequisite for H3K4me and H3K79me formation (By similarity) (700 aa)
     
 
  0.579
XP_501518.2
YALI0C06460p (543 aa)
       
  0.570
XP_505117.1
YALI0F07359p (289 aa)
         
  0.567
HTB1
YALI0E26455p; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (139 aa)
     
 
  0.523
XP_500368.1
YALI0B00990p; Involved in the biogenesis of the 60S ribosomal subunit (641 aa)
     
      0.514
UBC2
YALI0F26697p; Catalyzes the covalent attachment of ubiquitin to other proteins. Plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B to form H2BK123ub1. H2BK123ub1 gives a specific tag for epigenetic transcriptional activation and is also a prerequisite for H3K4me and H3K79me formation. Also involved in postreplication repair of UV-damaged DNA, in N-end rule-dependent protein degradation and in sporulation (151 aa)
       
 
  0.508
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
Server load: low (8%) [HD]