STRINGSTRING
XP_504413.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_504413.1" - YALI0E26147p in Yarrowia lipolytica
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_504413.1YALI0E26147p (366 aa)    
Predicted Functional Partners:
XP_501687.2
YALI0C10648p (2357 aa)
       
  0.952
XP_500537.1
YALI0B05632p (519 aa)
       
    0.949
XP_500730.2
YALI0B10692p (641 aa)
     
    0.947
XP_505676.1
YALI0F20724p (2106 aa)
       
  0.942
XP_500859.1
YALI0B13904p (1896 aa)
       
  0.942
XP_502013.1
YALI0C19426p (883 aa)
       
  0.923
XP_502814.1
YALI0D14102p (164 aa)
       
    0.921
XP_499664.1
YALI0A01782p (381 aa)
       
      0.905
PRP28
YALI0F28391p; ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5’-splice site duplex to permit an effective competition for the 5’-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5’-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity) (575 aa)
       
  0.853
XP_503948.1
YALI0E14619p (143 aa)
       
  0.833
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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