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RAI1 protein (Yarrowia lipolytica) - STRING interaction network
"RAI1" - YALI0E28490p in Yarrowia lipolytica
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAI1YALI0E28490p; Ribonuclease that specifically degrades pre-mRNAs with a defective 5’ end cap and is part of a pre-mRNA capping quality control. Has decapping and pyrophosphohydrolase activities. Has decapping activity toward incomplete 5’ end cap mRNAs such as unmethylated 5’ end-capped RNA to release GpppN and 5’ end monophosphate RNA. Also possesses RNA 5’-pyrophosphohydrolase activity by hydrolyzing the 5’ end triphosphate to release pyrophosphates (By similarity) (349 aa)    
Predicted Functional Partners:
RAT1
YALI0D13750p; Possesses 5’->3’ exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity) (1010 aa)
     
 
  0.979
XP_502167.1
YALI0C23144p; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1526 aa)
     
 
  0.941
XP_504719.1
YALI0E33231p (421 aa)
     
 
  0.935
XP_505404.1
YALI0F14245p (275 aa)
       
      0.756
XP_502573.1
YALI0D08419p (389 aa)
       
      0.756
XP_502501.1
YALI0D06776p (287 aa)
     
 
  0.664
XP_503541.1
YALI0E04444p (738 aa)
     
 
  0.618
XP_503612.1
YALI0E06039p (262 aa)
     
 
  0.556
XP_500645.1
YALI0B08514p (299 aa)
     
      0.530
XP_502680.1
YALI0D11000p (312 aa)
       
      0.514
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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