STRINGSTRING
XP_504534.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_504534.1" - YALI0E29051p in Yarrowia lipolytica
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_504534.1YALI0E29051p (333 aa)    
Predicted Functional Partners:
XP_501544.1
YALI0C07128p (553 aa)
   
 
  0.923
XP_500110.1
YALI0A15950p (855 aa)
   
 
  0.883
XP_501555.1
YALI0C07436p (582 aa)
   
 
  0.786
NTG1
YALI0F03641p; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines (483 aa)
       
 
  0.711
XP_502740.1
YALI0D12364p (710 aa)
     
  0.666
XP_502538.1
YALI0D07590p (471 aa)
     
 
  0.632
XP_503408.1
YALI0E01254p (387 aa)
   
 
  0.627
LIG4
YALI0D21384p; Involved in ds DNA break repair. Has a role in non- homologous integration (NHI) pathways where it is required in the final step of non-homologus end-joining (By similarity) (956 aa)
     
  0.625
KU80
YALI0E02068p; Single-stranded DNA-dependent ATP-dependent helicase. Involved in non-homologous end joining (NHEJ) DNA double strand break repair. DNA-binding is sequence-independent but has a high affinity to nicks in double-stranded DNA and to the ends of duplex DNA. Binds to naturally occurring chromosomal ends, and therefore provides chromosomal end protection. Required also for telomere recombination to repair telomeric ends in the absence of telomerase. KU70, of the KU70/KU80 heterodimer, binds to the stem loop of TLC1, the RNA component of telomerase. Involved in telomere mainten [...] (726 aa)
     
  0.605
XP_504846.1
YALI0F01034p (738 aa)
     
  0.600
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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