STRINGSTRING
XP_504952.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_504952.1" - YALI0F03542p in Yarrowia lipolytica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_504952.1YALI0F03542p (1107 aa)    
Predicted Functional Partners:
XP_501072.1
YALI0B18759p (2052 aa)
   
  0.986
XP_501721.1
YALI0C11407p (2266 aa)
   
  0.980
XP_499685.1
YALI0A02310p (496 aa)
       
 
  0.887
XP_505175.1
ubiquitin-60S ribosomal protein L40 fusion protein (128 aa)
       
  0.867
XP_500880.1
YALI0B14355p (352 aa)
     
  0.773
CCR4
YALI0B15147p; Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. Ccr4 has 3’-5’ RNase activity with a strong preference for polyadenylated substrates and also low exonuclease activity towards single-stranded DNA. Discovered because of its role in the control of ADH2 gene expression. It is required for the expression of genes involved in non-fermentative growth (By similarity) (705 aa)
   
  0.762
XP_503956.1
YALI0E14795p (388 aa)
   
  0.751
AKR1
YALI0E21780p; Palmitoyltransferase specific for casein kinase 1 (702 aa)
   
  0.750
XP_505336.1
YALI0F12617p (398 aa)
   
  0.744
XP_504472.1
YALI0E27533p (342 aa)
   
  0.744
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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