STRINGSTRING
XP_505376.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_505376.1" - YALI0F13497p in Yarrowia lipolytica
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_505376.1YALI0F13497p (395 aa)    
Predicted Functional Partners:
XP_502501.1
YALI0D06776p (287 aa)
       
    0.619
XP_501788.1
YALI0C13310p (1010 aa)
     
  0.611
XP_505654.1
YALI0F20240p (216 aa)
     
    0.593
XP_500645.1
YALI0B08514p (299 aa)
       
    0.588
RAT1
YALI0D13750p; Possesses 5’->3’ exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity) (1010 aa)
       
  0.586
XP_502167.1
YALI0C23144p; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1526 aa)
       
  0.586
XP_500905.1
YALI0B14905p (322 aa)
       
    0.585
XP_500881.1
YALI0B14377p (276 aa)
       
  0.566
XP_503629.1
YALI0E06501p (629 aa)
     
  0.565
XP_502826.1
YALI0D14542p (683 aa)
     
  0.565
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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