STRINGSTRING
XP_505472.1 protein (Yarrowia lipolytica) - STRING interaction network
"XP_505472.1" - YALI0F15851p in Yarrowia lipolytica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_505472.1YALI0F15851p (519 aa)    
Predicted Functional Partners:
XP_501072.1
YALI0B18759p (2052 aa)
       
 
  0.947
XP_501578.1
YALI0C07953p (704 aa)
     
  0.908
XP_499961.1
YALI0A10879p (162 aa)
     
 
  0.689
XP_505442.2
YALI0F15081p (731 aa)
       
 
  0.624
CCR4
YALI0B15147p; Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. Ccr4 has 3’-5’ RNase activity with a strong preference for polyadenylated substrates and also low exonuclease activity towards single-stranded DNA. Discovered because of its role in the control of ADH2 gene expression. It is required for the expression of genes involved in non-fermentative growth (By similarity) (705 aa)
       
 
  0.453
XP_501535.2
YALI0C06886p (157 aa)
           
  0.438
XP_505620.1
YALI0F19426p (679 aa)
           
  0.418
XP_502792.1
YALI0D13552p (513 aa)
           
  0.418
XP_499910.1
YALI0A09592p (442 aa)
           
  0.416
XP_500948.1
YALI0B15840p (325 aa)
     
 
  0.412
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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