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SNU13 protein (Yarrowia lipolytica) - STRING interaction network
"SNU13" - Small nucleolar ribonucleoprotein SNU13 in Yarrowia lipolytica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNU13Small nucleolar ribonucleoprotein SNU13; Common component of the spliceosome and rRNA processing machinery. In association with the spliceosomal U4/U6.U5 tri-snRNP particle, required for splicing of pre-mRNA. In association with box C/D snoRNPs, required for processing of pre-ribosomal RNA (rRNA) and site-specific 2’-O-methylation of substrate RNAs. Essential for the accumulation and stability of U4 snRNA, U6 snRNA, and box C/D snoRNAs (By similarity) (126 aa)    
Predicted Functional Partners:
NOP58
YALI0B00946p; Required for pre-18S rRNA processing. May bind microtubules (By similarity) (515 aa)
     
  0.993
XP_501884.1
rRNA methyltransferase NOP1 (321 aa)
     
  0.990
RPS4
40S ribosomal protein S4 (260 aa)
     
  0.985
RPS6
40S ribosomal protein S6 (242 aa)
   
  0.984
XP_501463.1
40S ribosomal protein S28 (69 aa)
   
  0.981
RPS1
40S ribosomal protein S1 (255 aa)
     
  0.980
XP_504321.1
40S ribosomal protein S3 (246 aa)
   
  0.980
XP_500850.1
YALI0B13706p (522 aa)
     
  0.977
XP_505414.1
40S ribosomal protein S17 (138 aa)
     
  0.976
XP_502814.1
YALI0D14102p (164 aa)
   
  0.976
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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