STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY20645.1PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB5053 hypothetical protein. (307 aa)    
Predicted Functional Partners:
EDY16292.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rca:Rcas_2791 oxidoreductase domain protein.
  
    0.781
EDY20644.1
PFAM: amidohydrolase 2; KEGG: sus:Acid_3067 amidohydrolase 2.
       0.773
EDY19009.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: stt:t4438 L-xylulose 5-phosphate 3-epimerase.
  
     0.602
EDY22014.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rxy:Rxyl_1725 oxidoreductase-like protein.
  
    0.587
EDY17119.1
PFAM: oxidoreductase domain protein; KEGG: rba:RB3265 probable glucose-fructose oxidoreductase.
  
    0.557
EDY18187.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB201 sugar phosphate isomerase/epimerase.
  
     0.536
EDY20643.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: rba:RB3322 similar to cytochrome c.
       0.534
EDY21599.1
KEGG: rca:Rcas_3850 hypothetical protein.
  
     0.514
EDY18094.1
KEGG: sth:STH1938 hypothetical protein.
  
     0.512
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
    0.508
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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