STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pga28APolygalacturonase, putative, pga28A; Identified by match to protein family HMM PF00295; match to protein family HMM TIGR01409; Belongs to the glycosyl hydrolase 28 family. (489 aa)    
Predicted Functional Partners:
urh105A
Unsaturated rhamnogalacturonyl hydrolase, putative, urh105A; Identified by match to protein family HMM PF03991; match to protein family HMM PF07470.
   
 0.982
pme8C
Pectin methylesterase, putative, pme8C; Identified by match to protein family HMM PF01095.
   
 0.847
pae12A
Pectin acetylesterase, putative, pae12A; Identified by match to protein family HMM PF00657.
 
 
 0.844
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.802
gly43I
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43I; Identified by match to protein family HMM PF03991; match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
    0.719
CJA_0168
Short-chain alcohol dehydrogenase family protein; Identified by match to protein family HMM PF00106.
 
     0.716
pme8A
Pectin methylesterase, putative, pme8A; Identified by match to protein family HMM PF01095; match to protein family HMM PF02368.
 
   
 0.686
CJA_3164
Sialic acid-specific 9-O-acetylesterase; Identified by match to protein family HMM PF02837.
 
 
 
 0.677
CJA_0171
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR01782; match to protein family HMM TIGR03304.
 
     0.658
pel10C
Pectate lyase, putative, pel10C.
   
 0.655
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.