STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gal53A-2Arabinogalactan endo-1,4-beta-galactosidase gal53A; Belongs to the glycosyl hydrolase 53 family. (376 aa)    
Predicted Functional Partners:
CJA_0498
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR01782.
 
   
 0.877
bgl2A
Beta-galactosidase, putative, bgl2A; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
   
 0.697
man5C
Endo-1, 4-beta mannanase, man5C; Identified by similarity to GB:AAO31761.1; match to protein family HMM PF00150; match to protein family HMM PF02013; match to protein family HMM PF02839.
  
     0.695
xyn5A
Endo-1,4-beta-xylanase, putative, xyn5A; Identified by match to protein family HMM PF00553; match to protein family HMM PF02055; Belongs to the glycosyl hydrolase 30 family.
  
   
 0.690
xyn11B
Endo-1,4-beta-xylanase, xyn11B; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.672
xyn10A
Endo-1,4-beta-xylanase, xyn10A; Identified by match to protein family HMM PF00331; match to protein family HMM PF00553; match to protein family HMM PF02013; Belongs to the glycosyl hydrolase 10 (cellulase F) family.
 
   
 0.664
man5D
Putative 1,4-beta mannosidase man5D; Identified by similarity to GB:AAS19695.1.
  
     0.657
bgl2C
Beta-galactosidase, putative, bgl2C; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
   
 0.657
ce2C
Acetyl xylan esterase, putative, axe2A; Involved in the degradation of plant cell wall polysaccharides. Catalyzes the deacetylation of acetylated birchwood xylan and glucomannan, with a large preference for the latter, and of the synthetic substrate 4-nitrophenyl acetate (4-NPAc).
  
     0.652
cel5H
Endo-1,4-beta glucanase, putative, cel5H; Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.651
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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