STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_0528Nitrate ABC transporter permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01183. (291 aa)    
Predicted Functional Partners:
CJA_0529
Nitrate-binding protein nrtA precursor, periplasmic; AGR_L_1886p; similar to protein from oscillatoriacean cyanobacterium; identified by match to protein family HMM TIGR01409.
 
 0.996
nrtC
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 0.985
CJA_0939
Nitrate transporter system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 0.985
nrtA
ABC transporter nitrate-binding protein; Identified by match to protein family HMM TIGR01409.
 
 0.984
CJA_0010
Possible nitrate transport system permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01183.
  
  
 
0.909
CJA_2343
AtsC; Identified by match to protein family HMM PF00005.
  
 0.837
CJA_2258
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.819
CJA_2720
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.462
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.