STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arb43AArabinanase and alpha-L-arabinofuranosidase, arb43A; Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyzes the cleavage of the terminal alpha-(1->5)-arabinofuranosyl bonds of linear arabinan and carboxymethylarabinan to produce almost exclusively arabinotriose; Belongs to the glycosyl hydrolase 43 family. (347 aa)    
Predicted Functional Partners:
gly43N
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.926
abf43L
alpha-L-arabinfuranosidase, putative, abf43L; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.850
CJA_0803
Conserved hypothetical protein.
 
   
 0.776
abfS
abfS arabinofuranosidase two component system sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
      
 0.772
abf43M
alpha-L-arabinfuranosidase, putative, abf43M; Identified by match to protein family HMM PF00652; match to protein family HMM PF04616.
   
 0.768
gly43D
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43D; Identified by match to protein family HMM PF00652; match to protein family HMM PF04616.
 
   
 0.767
rgl11A
Rhamnogalacturonan lyase, rgl11A; Identified by match to protein family HMM PF00041; match to protein family HMM PF00553; match to protein family HMM PF01839.
  
  
 0.712
pae12A
Pectin acetylesterase, putative, pae12A; Identified by match to protein family HMM PF00657.
  
     0.711
abf43K
alpha-L-arabinfuranosidase, putative, abf43K; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.704
abf51A
alpha-L-arabinofuranosidase, abf51A; Identified by match to protein family HMM PF06964.
 
   
 0.700
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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