STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abf43Lalpha-L-arabinfuranosidase, putative, abf43L; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family. (357 aa)    
Predicted Functional Partners:
arb43A
Arabinanase and alpha-L-arabinofuranosidase, arb43A; Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyzes the cleavage of the terminal alpha-(1->5)-arabinofuranosyl bonds of linear arabinan and carboxymethylarabinan to produce almost exclusively arabinotriose; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.850
CJA_0807
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
      0.831
CJA_1315
Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792.
  
  
 0.777
gly43E
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43E; Identified by match to protein family HMM PF04616.
 
   
 0.748
xyn11B
Endo-1,4-beta-xylanase, xyn11B; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.747
xyn11A
Endo-1,4-beta-xylanase, esterase, xyn11A; Identified by similarity to PIR:S59633; match to protein family HMM PF00457; match to protein family HMM PF01522; match to protein family HMM PF02013; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.747
gly43F
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43F; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
    
 0.732
abf51A
alpha-L-arabinofuranosidase, abf51A; Identified by match to protein family HMM PF06964.
 
   
 0.719
gly43N
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
   
 0.703
CJA_0803
Conserved hypothetical protein.
 
     0.690
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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