STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chi18BEndo-chitinase, putative, chi18B; Identified by match to protein family HMM PF00704; match to protein family HMM PF02839. (890 aa)    
Predicted Functional Partners:
hex20B
Beta-hexaminidase, putative, hex20B; Identified by similarity to SP:Q54468; match to protein family HMM PF00728; match to protein family HMM PF02838; match to protein family HMM PF03173; match to protein family HMM PF03174.
 
  
 0.972
hex20A
N-acetyl-beta-hexosaminidase, putative, hex20A; Identified by match to protein family HMM PF00728; match to protein family HMM PF02178; match to protein family HMM PF02838.
 
  
 0.933
CJA_0857
Domain of unknown function DUF227; Identified by match to protein family HMM PF01436; match to protein family HMM PF02958.
     
  0.900
cbp33/10B
Chitin binding protein, putative, cbp33/10B; Identified by match to protein family HMM PF03067.
 
   
 0.804
chi18C
Endo-chitinase, putative, chi18C; Identified by match to protein family HMM PF00704; match to protein family HMM PF02839; Belongs to the glycosyl hydrolase 18 family.
 
0.749
petB
Ubiquinol--cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.742
CJA_1083
Conserved hypothetical protein.
  
     0.740
chi19A
Chitinase, putative, chi19A; Identified by match to protein family HMM PF00182; match to protein family HMM PF03422.
  
   
 0.738
man5B
Endo-1, 4-beta mannanase, man5B; Identified by match to protein family HMM PF00150; match to protein family HMM PF00553; match to protein family HMM PF02013.
 
 
 
 0.721
man5A
Endo- 1,4-beta-mannanase man5A; Catalyzes the endo hydrolysis of beta-1,4-linked mannan, galactomannan and glucomannan. It is able to hydrolyze mannosidic linkages that are flanked by mannose or glucose.
 
 
 
 0.694
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.