STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cel5AEndo-1,4-beta glucanase, cel5A; Identified by similarity to PIR:S19652; match to protein family HMM PF00150; match to protein family HMM PF00553; match to protein family HMM PF02013. (747 aa)    
Predicted Functional Partners:
cel6A
Cellobiohydrolase, putative, cel6A; Identified by similarity to PRF:2109217A; match to protein family HMM PF00553; match to protein family HMM PF01341; match to protein family HMM PF02013; Belongs to the glycosyl hydrolase family 6.
  
 
0.938
cel3D
Putative 1,4-beta-D-glucan glucohydrolase cel3D; Identified by match to protein family HMM PF00657; match to protein family HMM PF00933; match to protein family HMM PF01915.
 
 0.875
CJA_1017
Putative lipoprotein.
 
 
   0.794
pel1C
Pectate lyase, putative, pel1C; Identified by match to protein family HMM PF00544.
 
   
 0.773
pel1E
Pectate lyase, putative, pel1E; Identified by match to protein family HMM PF00544.
 
   
 0.769
cbp6B
Carbohydrate binding protein, putative, cbp6B; Identified by match to protein family HMM PF03422.
 
 
   0.769
CJA_1396
Putative hemolysin; Identified by match to protein family HMM PF00028; match to protein family HMM PF00353; match to protein family HMM TIGR01965.
  
  
 0.758
pel3C
Pectate lyase, putative, pel3C; Identified by match to protein family HMM PF03211.
 
 
 0.753
CJA_2366
Conserved hypothetical protein; Identified by match to protein family HMM PF05114; Belongs to the UPF0276 family.
   
    0.751
CJA_1294
Regulatory P domain of the subtilisin-like proprotein.
 
 
   0.703
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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