STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_1815Conserved hypothetical protein. (163 aa)    
Predicted Functional Partners:
CJA_2434
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
  
     0.725
CJA_2159
Conserved hypothetical protein.
  
     0.624
CJA_3149
Hypothetical protein; Identified by Glimmer3; putative.
  
     0.611
CJA_2600
Hypothetical protein; Identified by Glimmer3; putative.
  
     0.543
CJA_2407
Hypothetical protein; Identified by Glimmer3; putative.
  
     0.535
CJA_0886
Conserved hypothetical protein.
  
     0.500
CJA_1814
Putative signal transduction protein containing EAL and modified HD-GYP domains.
       0.488
CJA_1771
Conserved hypothetical protein.
  
     0.482
CJA_0189
Hypothetical protein; Identified by Glimmer3; putative.
  
     0.476
CJA_1816
Hypothetical protein; Identified by Glimmer3; putative.
       0.469
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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